DelayedMatrixStats

DOI: 10.18129/B9.bioc.DelayedMatrixStats    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: 3.8

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey <peter.hickey at gmail.com>

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")

 

HTML	R Script	Overview of DelayedMatrixStats
PDF		Reference Manual
Text		LICENSE

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.4.0
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	MIT + file LICENSE
Depends	DelayedArray(>= 0.7.37)
Imports	methods, matrixStats (>= 0.53.1), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel
LinkingTo
Suggests	testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem
SystemRequirements
Enhances
URL	https://github.com/PeteHaitch/DelayedMatrixStats
BugReports	https://github.com/PeteHaitch/DelayedMatrixStats/issues
Depends On Me
Imports Me	bsseq, dmrseq, minfi, scater, scran
Suggests Me	DelayedArray
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DelayedMatrixStats_1.4.0.tar.gz
Windows Binary	DelayedMatrixStats_1.4.0.zip
Mac OS X 10.11 (El Capitan)	DelayedMatrixStats_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Package Short Url	http://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report	Download Stats