DOI: 10.18129/B9.bioc.wateRmelon    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see wateRmelon.

Illumina 450 methylation array normalization and metrics

Bioconductor version: 3.7

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic, Tyler Gorrie-Stone, Louis El Khoury

Maintainer: Leo <lschal at essex.ac.uk>

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biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.24.0
In Bioconductor since BioC 2.12 (R-3.0) (5.5 years)
License GPL-3
Depends R (>= 2.10), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports Biobase
Suggests RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Enhances minfi
Depends On Me bigmelon, skewr
Imports Me ChAMP, ENmix
Suggests Me RnBeads
Links To Me
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Source Package wateRmelon_1.24.0.tar.gz
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Package Short Url http://bioconductor.org/packages/wateRmelon/
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