spliceR

DOI: 10.18129/B9.bioc.spliceR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see spliceR.

Classification of alternative splicing and prediction of coding potential from RNA-seq data.

Bioconductor version: 3.7

An R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.

Author: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>

Maintainer: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceR")

 

PDF	R Script	spliceR Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, Sequencing, Software, Transcription, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (5 years)
License	GPL (>=2)
Depends	R (>= 2.15.0), methods, cummeRbund, rtracklayer, VennDiagram, RColorBrewer, plyr
Imports	GenomicRanges, IRanges
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg19, BSgenome
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	spliceR_1.22.0.tar.gz
Windows Binary	spliceR_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	spliceR_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/spliceR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spliceR
Package Short Url	http://bioconductor.org/packages/spliceR/
Package Downloads Report	Download Stats