DOI: 10.18129/B9.bioc.rSFFreader    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see rSFFreader.

rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers

Bioconductor version: 3.7

rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present for fastq files.

Author: Matt Settles <mattsettles at>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho

Maintainer: Matt Settles <mattsettles at>

Citation (from within R, enter citation("rSFFreader")):


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PDF R Script An introduction to rSFFreader
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biocViews DataImport, Sequencing, Software
Version 0.28.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License Artistic-2.0
Depends ShortRead(>= 1.23.17)
Imports methods, Biostrings, IRanges
LinkingTo S4Vectors(>= 0.13.8), IRanges, XVector, Biostrings
Suggests xtable
Depends On Me
Imports Me hiReadsProcessor
Suggests Me
Links To Me
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