DOI: 10.18129/B9.bioc.r3Cseq    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see r3Cseq.

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: 3.7

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, UK <supat.thongjuea at ndcls.ox.ac.uk>

Maintainer: Supat Thongjuea <supat.thongjuea at ndcls.ox.ac.uk>

Citation (from within R, enter citation("r3Cseq")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script r3Cseq
PDF   Reference Manual
Text   NEWS


biocViews Preprocessing, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.9 (R-2.14) (7 years)
License GPL-3
Depends GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue
Imports methods, GenomeInfoDb, IRanges, Biostrings, data.table, sqldf, RColorBrewer
Suggests BSgenome.Mmusculus.UCSC.mm9.masked, BSgenome.Mmusculus.UCSC.mm10.masked, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BSgenome.Rnorvegicus.UCSC.rn5.masked
URL http://r3cseq.genereg.net
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package r3Cseq_1.26.0.tar.gz
Windows Binary r3Cseq_1.26.0.zip
Mac OS X 10.11 (El Capitan) r3Cseq_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/r3Cseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/r3Cseq
Package Short Url http://bioconductor.org/packages/r3Cseq/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: