DOI: 10.18129/B9.bioc.pdInfoBuilder    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see pdInfoBuilder.

Platform Design Information Package Builder

Bioconductor version: 3.7

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>

Citation (from within R, enter citation("pdInfoBuilder")):


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PDF Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF R Script PDInfo Package Building Affymetrix Mapping Chips
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Infrastructure, Software
Version 1.44.0
In Bioconductor since BioC 2.0 (R-2.5) (11.5 years)
License Artistic-2.0
Depends R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5)
Imports Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22)
Depends On Me
Imports Me
Suggests Me maqcExpression4plex
Links To Me
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Source Package pdInfoBuilder_1.44.0.tar.gz
Windows Binary pdInfoBuilder_1.44.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) pdInfoBuilder_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pdInfoBuilder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pdInfoBuilder
Package Short Url http://bioconductor.org/packages/pdInfoBuilder/
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