This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see pcaGoPromoter.
Bioconductor version: 3.7
This package contains functions to ease the analyses of DNA micro arrays. It utilizes principal component analysis as the initial multivariate analysis, followed by functional interpretation of the principal component dimensions with overrepresentation analysis for GO terms and regulatory interpretations using overrepresentation analysis of predicted transcription factor binding sites with the primo algorithm.
Author: Morten Hansen, Jorgen Olsen
Maintainer: Morten Hansen <mhansen at sund.ku.dk>
Citation (from within R,
enter citation("pcaGoPromoter")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pcaGoPromoter")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pcaGoPromoter")
R Script | pcaGoPromoter | |
Reference Manual |
biocViews | GO, GeneExpression, Microarray, Software, Visualization |
Version | 1.24.0 |
In Bioconductor since | BioC 2.10 (R-2.15) (6.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.14.0), ellipse, Biostrings |
Imports | AnnotationDbi |
LinkingTo | |
Suggests | Rgraphviz, GO.db, hgu133plus2.db, mouse4302.db, rat2302.db, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, pcaGoPromoter.Hs.hg19, pcaGoPromoter.Mm.mm9, pcaGoPromoter.Rn.rn4, serumStimulation, parallel |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | pcaGoPromoter_1.24.0.tar.gz |
Windows Binary | pcaGoPromoter_1.24.0.zip |
Mac OS X 10.11 (El Capitan) | pcaGoPromoter_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pcaGoPromoter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pcaGoPromoter |
Package Short Url | http://bioconductor.org/packages/pcaGoPromoter/ |
Package Downloads Report | Download Stats |
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