Pviz

DOI: 10.18129/B9.bioc.Pviz    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Pviz.

Peptide Annotation and Data Visualization using Gviz

Bioconductor version: 3.7

Pviz adapts the Gviz package for protein sequences and data.

Author: Renan Sauteraud, Mike Jiang, Raphael Gottardo

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Pviz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Pviz")

 

PDF	R Script	The Pviz users guide
PDF		Reference Manual

Details

biocViews	Microarray, Proteomics, Software, Visualization
Version	1.14.0
In Bioconductor since	BioC 3.0 (R-3.1) (4 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), Gviz(>= 1.7.10)
Imports	biovizBase, Biostrings, GenomicRanges, IRanges, data.table, methods
LinkingTo
Suggests	knitr, pepDat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	Pbase
Suggests Me	pepStat
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Pviz_1.14.0.tar.gz
Windows Binary	Pviz_1.14.0.zip
Mac OS X 10.11 (El Capitan)	Pviz_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Pviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Pviz
Package Short Url	http://bioconductor.org/packages/Pviz/
Package Downloads Report	Download Stats