DOI: 10.18129/B9.bioc.HiTC    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see HiTC.

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: 3.7

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

Citation (from within R, enter citation("HiTC")):


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PDF R Script Hi-C data analysis using HiTC
PDF R Script Introduction to HiTC package
PDF   Reference Manual
Text   NEWS


biocViews HiC, HighThroughputSequencing, Sequencing, Software
Version 1.24.0
In Bioconductor since BioC 2.10 (R-2.15) (6.5 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix, parallel, GenomeInfoDb
Suggests BiocStyle, HiCDataHumanIMR90
Depends On Me
Imports Me
Suggests Me HiCDataHumanIMR90
Links To Me
Build Report  

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Source Package HiTC_1.24.0.tar.gz
Windows Binary HiTC_1.24.0.zip
Mac OS X 10.11 (El Capitan) HiTC_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HiTC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiTC
Package Short Url http://bioconductor.org/packages/HiTC/
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