PasillaTranscriptExpr

DOI: 10.18129/B9.bioc.PasillaTranscriptExpr    

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: Release (3.6)

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PasillaTranscriptExpr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

 

PDF	R Script	Generation of transcript counts from pasilla dataset with kallisto
PDF		Reference Manual
Text		NEWS

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version	1.6.0
License	GPL (>= 3)
Depends	R (>= 3.3.0)
Imports
LinkingTo
Suggests	rtracklayer, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	DRIMSeq
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PasillaTranscriptExpr_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr
Package Short Url	http://bioconductor.org/packages/PasillaTranscriptExpr/
Package Downloads Report	Download Stats