polyester

DOI: 10.18129/B9.bioc.polyester    

Simulate RNA-seq reads

Bioconductor version: Release (3.6)

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek

Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("polyester")

Documentation

HTML	R Script	The Polyester package for simulating RNA-seq reads
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Sequencing, Software
Version	1.14.1
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports	Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc
LinkingTo
Suggests	knitr, ballgown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	polyester_1.14.1.tar.gz
Windows Binary	polyester_1.14.1.zip
Mac OS X 10.11 (El Capitan)	polyester_1.14.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/polyester
Package Short Url	http://bioconductor.org/packages/polyester/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive