panelcn.mops

DOI: 10.18129/B9.bioc.panelcn.mops    

CNV detection tool for targeted NGS panel data

Bioconductor version: Release (3.6)

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid, Gundula Povysil

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("panelcn.mops")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")

 

PDF	R Script	panelcn.mops: Manual for the R package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version	1.0.0
License	LGPL (>= 2.0)
Depends	R (>= 3.4), cn.mops, methods, utils, stats, graphics
Imports	GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices
LinkingTo
Suggests	knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	panelcn.mops_1.0.0.tar.gz
Windows Binary	panelcn.mops_1.0.0.zip
Mac OS X 10.11 (El Capitan)	panelcn.mops_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/panelcn.mops
Package Short Url	http://bioconductor.org/packages/panelcn.mops/
Package Downloads Report	Download Stats