ontoProc

DOI: 10.18129/B9.bioc.ontoProc    

processing of ontologies of anatomy, cell lines, and so on

Bioconductor version: Release (3.6)

Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoProc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ontoProc")

 

PDF	R Script	ontoProc: RDF ontology processing
PDF		Reference Manual
Text		NEWS

Details

biocViews	GO, Infrastructure, Software
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 3.4), ontologyIndex
Imports	Biobase, S4Vectors, methods, AnnotationDbi, stats, utils, shiny
LinkingTo
Suggests	knitr, org.Hs.eg.db, org.Mm.eg.db, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	tenXplore
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ontoProc_1.0.0.tar.gz
Windows Binary	ontoProc_1.0.0.zip
Mac OS X 10.11 (El Capitan)	ontoProc_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ontoProc
Package Short Url	http://bioconductor.org/packages/ontoProc/
Package Downloads Report	Download Stats