graphite

DOI: 10.18129/B9.bioc.graphite    

GRAPH Interaction from pathway Topological Environment

Bioconductor version: Release (3.6)

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

 

PDF R Script GRAPH Interaction from pathway Topological Environment
HTML metabolites.html
PDF   Reference Manual
Text   NEWS

Details

biocViews BioCarta, GraphAndNetwork, KEGG, Metabolomics, Network, Pathways, Reactome, Software, ThirdPartyClient
Version 1.24.1
In Bioconductor since BioC 2.9 (R-2.14) (6.5 years)
License AGPL-3
Depends R (>= 2.10), methods
Imports AnnotationDbi, checkmate, graph, httr, rappdirs, stats, utils
LinkingTo
Suggests a4Preproc, ALL, BiocStyle, clipper, codetools, hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db, parallel, R.rsp, RCy3, rmarkdown, SPIA(>= 2.2), testthat, topologyGSA (>= 1.4.0)
SystemRequirements
Enhances
URL
Depends On Me ToPASeq
Imports Me facopy, mogsa, ReactomePA
Suggests Me clipper
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package graphite_1.24.1.tar.gz
Windows Binary graphite_1.24.1.zip
Mac OS X 10.11 (El Capitan) graphite_1.24.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/graphite
Package Short Url http://bioconductor.org/packages/graphite/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

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