domainsignatures

DOI: 10.18129/B9.bioc.domainsignatures    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see domainsignatures.

Geneset enrichment based on InterPro domain signatures

Bioconductor version: Release (3.6)

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("domainsignatures")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("domainsignatures")

 

PDF	R Script	Gene set enrichment using InterPro domain signatures
PDF		Reference Manual

Details

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	1.38.0
In Bioconductor since	BioC 2.3 (R-2.8) (9.5 years)
License	Artistic-2.0
Depends	R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports	AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	domainsignatures_1.38.0.tar.gz
Windows Binary	domainsignatures_1.38.0.zip
Mac OS X 10.11 (El Capitan)	domainsignatures_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/domainsignatures
Package Short Url	http://bioconductor.org/packages/domainsignatures/
Package Downloads Report	Download Stats