derfinderPlot

DOI: 10.18129/B9.bioc.derfinderPlot    

Plotting functions for derfinder

Bioconductor version: Release (3.6)

This package provides plotting functions for results from the derfinder package.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("derfinderPlot")

Documentation

HTML	R Script	Introduction to derfinderPlot
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, RNASeq, Sequencing, Software, Visualization
Version	1.12.3
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	Artistic-2.0
Depends	R (>= 3.2)
Imports	derfinder(>= 1.1.0), GenomeInfoDb(>= 1.3.3), GenomicFeatures, GenomicRanges(>= 1.17.40), ggbio(>= 1.13.13), ggplot2, graphics, grDevices, IRanges(>= 1.99.28), limma, methods, plyr, RColorBrewer, reshape2, S4Vectors(>= 0.9.38), scales, utils
LinkingTo
Suggests	biovizBase, bumphunter(>= 1.7.6), derfinderData(>= 0.99.0), devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6), BiocStyle(>= 2.5.19), org.Hs.eg.db, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL	https://github.com/leekgroup/derfinderPlot
BugReports	https://support.bioconductor.org/t/derfinderPlot
Depends On Me
Imports Me
Suggests Me	derfinder, regionReport
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	derfinderPlot_1.12.3.tar.gz
Windows Binary	derfinderPlot_1.12.3.zip
Mac OS X 10.11 (El Capitan)	derfinderPlot_1.12.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/derfinderPlot
Package Short Url	http://bioconductor.org/packages/derfinderPlot/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive