cghMCR

DOI: 10.18129/B9.bioc.cghMCR    

Find chromosome regions showing common gains/losses

Bioconductor version: Release (3.6)

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

 

PDF	R Script	cghMCR findMCR
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.36.0
In Bioconductor since	BioC 1.8 (R-2.3) (12 years)
License	LGPL
Depends	methods, DNAcopy, CNTools, limma
Imports	BiocGenerics(>= 0.1.6), stats4
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cghMCR_1.36.0.tar.gz
Windows Binary	cghMCR_1.36.0.zip
Mac OS X 10.11 (El Capitan)	cghMCR_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cghMCR
Package Short Url	http://bioconductor.org/packages/cghMCR/
Package Downloads Report	Download Stats