CNTools

DOI: 10.18129/B9.bioc.CNTools    

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (3.6)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

 

PDF	R Script	NCTools HowTo
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.34.0
In Bioconductor since	BioC 2.5 (R-2.10) (8.5 years)
License	LGPL
Depends	R (>= 2.10), methods, tools, stats, genefilter
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	cghMCR
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNTools_1.34.0.tar.gz
Windows Binary	CNTools_1.34.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	CNTools_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNTools
Package Short Url	http://bioconductor.org/packages/CNTools/
Package Downloads Report	Download Stats