RTNduals

DOI: 10.18129/B9.bioc.RTNduals    

Analysis of co-regulatory network motifs and inference of 'dual regulons'

Bioconductor version: Release (3.6)

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulon pairs agree on the predicted downstream effects.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Vinicius Chagas <chagas.vis at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>, Mauro Castro <mauro.castro at ufpr.br>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTNduals")

Documentation

HTML	R Script	RTNduals: analysis of co-regulatory network motifs and inference of 'dual regulons'.
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.3.3), methods, RTN(>= 1.15.6)
Imports	graphics, grDevices, stats, utils
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	RTNsurvival
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RTNduals_1.2.0.tar.gz
Windows Binary	RTNduals_1.2.0.zip
Mac OS X 10.11 (El Capitan)	RTNduals_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RTNduals
Package Short Url	http://bioconductor.org/packages/RTNduals/
Package Downloads Report	Download Stats