Onassis

DOI: 10.18129/B9.bioc.Onassis    

OnASSIs Ontology Annotation and Semantic SImilarity software

Bioconductor version: Release (3.6)

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.

Author: Eugenia Galeota

Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Onassis")

Documentation

HTML	R Script	Onassis: Ontology Annotation and Semantic Similarity software
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Clustering, DataImport, GeneTarget, Network, Software
Version	1.0.1
License	GPL-2
Depends	R (>= 3.4), rJava, OnassisJavaLibs
Imports	GEOmetadb, RSQLite, SRAdb, data.table, methods, tools, utils, AnnotationDbi
LinkingTo
Suggests	BiocStyle, rmarkdown, knitr, htmltools, DT, org.Hs.eg.db, gplots, GenomicRanges
SystemRequirements	Java (>= 1.8)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Onassis_1.0.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	Onassis_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Onassis
Package Short Url	http://bioconductor.org/packages/Onassis/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive