DOI: 10.18129/B9.bioc.MotIV    

Motif Identification and Validation

Bioconductor version: Release (3.6)

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at>, Raphael Gottardo <rgottard at>

Citation (from within R, enter citation("MotIV")):


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PDF R Script The MotIV users guide
PDF   Reference Manual


biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software
Version 1.34.0
In Bioconductor since BioC 2.6 (R-2.11) (8 years)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.1.0)
Imports graphics, grid, methods, S4Vectors, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, utils
Suggests rtracklayer
SystemRequirements GNU Scientific Library >= 1.6 (
Depends On Me motifStack
Imports Me
Suggests Me MotifDb
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