GEOsearch

DOI: 10.18129/B9.bioc.GEOsearch    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GEOsearch.

GEOsearch

Bioconductor version: Release (3.6)

GEOsearch is an extendable search engine for NCBI GEO (Gene Expression Omnibus). Instead of directly searching the term, GEOsearch can find all the gene names contained in the search term and search all the alias of the gene names simultaneously in GEO database. GEOsearch also provides other functions such as summarizing common biology keywords in the search results.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEOsearch")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOsearch")

 

PDF	R Script	GEOsearch: Extendable Search Engine for Gene Expression Omnibus
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, Software
Version	1.1.4
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL(>=2)
Depends	R (>= 3.2)
Imports	RCurl, org.Hs.eg.db, org.Mm.eg.db
LinkingTo
Suggests	knitr, shiny, DT, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GEOsearch_1.1.4.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/GEOsearch
Package Short Url	http://bioconductor.org/packages/GEOsearch/
Package Downloads Report	Download Stats