EnrichedHeatmap

DOI: 10.18129/B9.bioc.EnrichedHeatmap    

Making Enriched Heatmaps

Bioconductor version: Release (3.6)

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")

Documentation

HTML	R Script	Compare row ordering methods
HTML	R Script	Make Enriched Heatmaps
HTML	R Script	Visualize Categorical Signals
HTML	R Script	Visualize Comprehensive Associations in Roadmap dataset
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, GenomeAnnotation, Sequencing, Software, Visualization
Version	1.9.4
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.1.2), methods, grid, ComplexHeatmap(>= 1.15.2), GenomicRanges
Imports	matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.1), IRanges
LinkingTo	Rcpp
Suggests	testthat (>= 0.3), knitr, markdown, genefilter, RColorBrewer
SystemRequirements
Enhances
URL	https://github.com/jokergoo/EnrichedHeatmap
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EnrichedHeatmap_1.9.4.tar.gz
Windows Binary	EnrichedHeatmap_1.9.4.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	EnrichedHeatmap_1.9.4.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EnrichedHeatmap
Package Short Url	http://bioconductor.org/packages/EnrichedHeatmap/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive