ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap    

Making Complex Heatmaps

Bioconductor version: Release (3.6)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

Documentation

HTML	R Script	1. Introduction to ComplexHeatmap package
HTML	R Script	2. Making a single heatmap
HTML	R Script	3. Making a list of Heatmaps
HTML	R Script	4. Heatmap Annotations
HTML	R Script	5. Heatmap and Annotation Legends
HTML	R Script	6. Heatmap Decoration
HTML	R Script	7. Interactive with Heatmaps
HTML	R Script	8. OncoPrint
HTML	R Script	9. More Examples
PDF		Reference Manual
Text		NEWS

Details

biocViews	Sequencing, Software, Visualization
Version	1.17.1
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	GPL (>= 2)
Depends	R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports	circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.0.10)
LinkingTo
Suggests	testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)
SystemRequirements
Enhances
URL	https://github.com/jokergoo/ComplexHeatmap
Depends On Me	EnrichedHeatmap, recoup
Imports Me	DEGreport, DEP, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, maftools, MWASTools, TCGAbiolinks, YAPSA
Suggests Me	gtrellis, HilbertCurve
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ComplexHeatmap_1.17.1.tar.gz
Windows Binary	ComplexHeatmap_1.17.1.zip
Mac OS X 10.11 (El Capitan)	ComplexHeatmap_1.17.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ComplexHeatmap
Package Short Url	http://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive