DOI: 10.18129/B9.bioc.EBImage    

Image processing and analysis toolbox for R

Bioconductor version: Release (3.6)

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Citation (from within R, enter citation("EBImage")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script Introduction to EBImage
PDF   Reference Manual
Text   NEWS


biocViews Software, Visualization
Version 4.20.1
In Bioconductor since BioC 1.8 (R-2.3) (12 years)
License LGPL
Imports BiocGenerics(>= 0.7.1), methods, graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl
Suggests BiocStyle, digest, knitr, rmarkdown, shiny
URL https://github.com/aoles/EBImage
BugReports https://github.com/aoles/EBImage/issues
Depends On Me CRImage, DonaPLLP2013, FISHalyseR, flowcatchR, furrowSeg, HD2013SGI, imageHTS, PGPC
Imports Me bnbc, CONFESS, flowCHIC, heatmaps, MaxContrastProjection, yamss
Suggests Me DmelSGI, ggtree, HilbertVis, tofsims
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBImage_4.20.1.tar.gz
Windows Binary EBImage_4.20.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) EBImage_4.20.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBImage
Package Short Url http://bioconductor.org/packages/EBImage/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

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