CoverageView

DOI: 10.18129/B9.bioc.CoverageView    

Coverage visualization package for R

Bioconductor version: Release (3.6)

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

Author: Ernesto Lowy

Maintainer: Ernesto Lowy <ernestolowy at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CoverageView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoverageView")

 

PDF	R Script	Easy visualization of the read coverage
PDF		Reference Manual

Details

biocViews	ChIPSeq, RNASeq, Sequencing, Software, Technology, Visualization
Version	1.16.0
In Bioconductor since	BioC 2.14 (R-3.1) (4 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer
Imports	S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CoverageView_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	CoverageView_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CoverageView
Package Short Url	http://bioconductor.org/packages/CoverageView/
Package Downloads Report	Download Stats