BioMedR

DOI: 10.18129/B9.bioc.BioMedR    

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BioMedR.

Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions

Bioconductor version: Release (3.6)

The BioMedR package offers an R/Bioconductor package generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.

Author: Min-feng Zhu <wind2zhu at 163.com>, Jie Dong <biomed at csu.edu.cn>, Dong-sheng Cao <oriental-cds at 163.com>

Maintainer: Min-feng Zhu <wind2zhu at 163.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioMedR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMedR")

 

PDF	R Script	BioMedR: R/Bioconductor Package for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	BiomedicalInformatics, Cheminformatics, DataImport, DataRepresentation, FeatureExtraction, GO, GraphAndNetwork, Proteomics, Software, SystemsBiology
Version	1.1.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends
Imports	RCurl, rjson, rcdk (>= 3.3.2), foreach, doParallel, Biostrings, GOSemSim, ChemmineR, fmcsR, pls, randomForest, utils, stats, graphics, methods, org.Hs.eg.db, ChemmineOB
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements	Java JDK 1.8 or higher
Enhances
URL	https://github.com/wind22zhu/BioMedR
BugReports	https://github.com/wind22zhu/BioMedR/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioMedR_1.1.0.tar.gz
Windows Binary	BioMedR_1.1.0.zip
Mac OS X 10.11 (El Capitan)	BioMedR_1.1.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioMedR
Package Short Url	http://bioconductor.org/packages/BioMedR/
Package Downloads Report	Download Stats