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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAshapeR")
In most cases, you don't need to download the package archive at all.
DNAshapeR
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High-throughput prediction of DNA shape features
Bioconductor version: Release (3.5)
DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.
Author: Tsu-Pei Chiu and Federico Comoglio
Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>
Citation (from within R,
enter citation("DNAshapeR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAshapeR")
Documentation
| HTML | R Script | DNAshapeR |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNA3DStructure, Software, StructuralPrediction |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3), GenomicRanges |
| Imports | Rcpp (>= 0.12.1), Biostrings, fields |
| LinkingTo | Rcpp |
| Suggests | AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DNAshapeR_1.4.0.tar.gz |
| Windows Binary | DNAshapeR_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | DNAshapeR_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DNAshapeR |
| Package Short Url | http://bioconductor.org/packages/DNAshapeR/ |
| Package Downloads Report | Download Stats |
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