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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tximportData")
In most cases, you don't need to download the package archive at all.
tximportData
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see tximportData.
tximportData
Bioconductor version: 3.4
This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. For details on version numbers, sample information, and details on calls, see the package vignette.
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation (from within R,
enter citation("tximportData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tximportData")
Documentation
| HTML | R Script | Sample output files for tximport |
| Reference Manual |
Details
| biocViews | ExperimentData, RNASeqData, SequencingData |
| Version | 1.2.0 |
| License | GPL (>= 2) |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DESeq2, tximport, variancePartition |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | tximportData_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/tximportData/ |
| Package Downloads Report | Download Stats |
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