- Home
- Bioconductor 3.4
- Experiment Packages
- RTCGA.CNV
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.CNV")
In most cases, you don't need to download the package archive at all.
RTCGA.CNV
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see RTCGA.CNV.
CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project
Bioconductor version: 3.4
Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.
Author: Przemyslaw Biecek <przemyslaw.biecek at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
Citation (from within R,
enter citation("RTCGA.CNV")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.CNV")
Documentation
| HTML | R Script | Using RTCGA to download CNV data as included in RTCGA.CNV |
| HTML | R Script | Using RTCGA to estimate ratio of MDM2 duplications |
| Reference Manual |
Details
| biocViews | AnnotationData, ExperimentData |
| Version | 1.2.0 |
| License | GPL-2 |
| Depends | R (>= 3.3.0), RTCGA |
| Imports | |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| BugReports | https://github.com/RTCGA/RTCGA/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RTCGA |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RTCGA.CNV_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/RTCGA.CNV/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
