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PtH2O2lipids
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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see PtH2O2lipids.
P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)
Bioconductor version: 3.4
Annotated HPLC-ESI-MS lipid data in positive ionization mode from an experiment in which cultures of the marine diatom Phaeodactylum tricornutum were treated with various concentrations of hydrogen peroxide (H2O2) to induce oxidative stress. The experiment is described in Graff van Creveld, et al., 2015, "Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms," ISME Journal 9:385-395. PtH2O2lipids consists of two objects: A CAMERA xsAnnotate object (ptH2O2lipids$xsAnnotate) and LOBSTAHS LOBSet object (ptH2O2lipids$xsAnnotate$LOBSet). The LOBSet includes putative compound assignments from the default LOBSTAHS database. Isomer annotation is recorded in three other LOBSet slots.
Author: Shiri Graff van Creveld [aut], Shilo Rosenwasser [aut], Daniella Schatz [aut], Ilan Koren [aut], Assaf Vardi [aut], James Collins [cre]
Maintainer: James Collins <james.r.collins at aya.yale.edu>
Citation (from within R,
enter citation("PtH2O2lipids")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PtH2O2lipids")
Documentation
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | CellCulture, ExperimentData, MassSpectrometryData, Phaeodactylum_tricornutum_data, ReproducibleResearch |
| Version | 1.0.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 3.3), xcms, CAMERA, LOBSTAHS, methods, utils |
| Imports | |
| LinkingTo | |
| Suggests | gplots, RColorBrewer, cluster, vegan, clustsig |
| SystemRequirements | |
| Enhances | |
| URL | http://dx.doi.org/10.1038/ismej.2014.136 https://github.com/vanmooylipidomics/PtH2O2lipids http://www.whoi.edu/page.do?pid=133616&tid=282&cid=192529 |
| BugReports | https://github.com/vanmooylipidomics/PtH2O2lipids/issues/new |
| Depends On Me | |
| Imports Me | |
| Suggests Me | LOBSTAHS |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | PtH2O2lipids_1.0.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/PtH2O2lipids/ |
| Package Downloads Report | Download Stats |
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