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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")
In most cases, you don't need to download the package archive at all.
mQTL.NMR
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This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see mQTL.NMR.
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Bioconductor version: 3.3
mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.
Author: Lyamine Hedjazi and Jean-Baptiste Cazier
Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>
Citation (from within R,
enter citation("mQTL.NMR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mQTL.NMR")
| R Script | Frequently Asked Questions | |
| R Script | How to use the mQTL.NMR package | |
| Reference Manual |
Details
| biocViews | Cheminformatics, Genetics, Metabolomics, SNP, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (2 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.0) |
| Imports | qtl, GenABEL, MASS, outliers, graphics, stats, utils |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | http://www.ican-institute.org/tools/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mQTL.NMR_1.6.0.tar.gz |
| Windows Binary | mQTL.NMR_1.6.0.zip |
| Mac OS X 10.9 (Mavericks) | mQTL.NMR_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/mQTL.NMR/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/mQTL.NMR/ |
| Package Downloads Report | Download Stats |
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