- Home
- Bioconductor 3.3
- Software Packages
- NanoStringDiff
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NanoStringDiff")
In most cases, you don't need to download the package archive at all.
NanoStringDiff
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see NanoStringDiff.
Differential Expression Analysis of NanoString nCounter Data
Bioconductor version: 3.3
This Package utilizes a generalized linear model(GLM) of the negative binomial family to characterize count data and allows for multi-factor design. NanoStrongDiff incorporate size factors, calculated from positive controls and housekeeping controls, and background level, obtained from negative controls, in the model framework so that all the normalization information provided by NanoString nCounter Analyzer is fully utilized.
Author: hong wang <hong.wang at uky.edu>, chi wang <chi.wang at uky.edu>
Maintainer: hong wang <hong.wang at uky.edu>
Citation (from within R,
enter citation("NanoStringDiff")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NanoStringDiff")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringDiff")
| R Script | NanoStringDiff Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, Normalization, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | GPL |
| Depends | Biobase |
| Imports | matrixStats, methods |
| LinkingTo | |
| Suggests | testthat, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | NanoStringDiff_1.2.0.tar.gz |
| Windows Binary | NanoStringDiff_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | NanoStringDiff_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/NanoStringDiff/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/NanoStringDiff/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
