scpdata

This is the development version of scpdata; for the stable release version, see scpdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Single-Cell Proteomics Data Package

Bioconductor version: Development (3.24)

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut] ORCID: 0000-0001-7443-5427 , Laurent Gatto [aut, cre] ORCID: 0000-0002-1520-2268 , Enes Ayar [dtc] ORCID: 0000-0001-8881-9800 , Samuel Grégoire [dtc] ORCID: 0000-0002-0900-7677 , Léopold Guyot [dtc] ORCID: 0009-0005-2217-3855

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("scpdata")):

Christophe Vanderaa, Laurent Gatto. scpdata: Single-Cell Proteomics Data Package. doi:10.18129/B9.bioc.scpdata, R package version 1.21.6, https://bioconductor.org/packages/scpdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("scpdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scpdata")

Contribution guidelines	HTML	R Script
Data Package for Single Cell Proteomics	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData
Version	1.21.6
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	GPL-3
Depends	R (>= 4.2.0), QFeatures, ExperimentHub
Imports	utils, AnnotationHub, SingleCellExperiment, S4Vectors
System Requirements
URL	https://UCLouvain-CBIO.github.io/scpdata/

Suggests	scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	scp
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scpdata_1.21.6.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/scpdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scpdata
Package Short Url	https://bioconductor.org/packages/scpdata/
Package Downloads Report	Download Stats