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Single-Cell Proteomics Data Package

Bioconductor version: Release (3.19)

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut, cre] , Laurent Gatto [aut] , Enes Ayar [dtc] , Samuel Grégoire [dtc]

Maintainer: Christophe Vanderaa <christophe.vanderaa at>

Citation (from within R, enter citation("scpdata")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Contribution guidelines HTML R Script
Data Package for Single Cell Proteomics HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData
Version 1.12.0
License GPL-2
Depends R (>= 4.2.0), QFeatures, ExperimentHub
Imports utils, AnnotationHub, SingleCellExperiment, S4Vectors
System Requirements
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Suggests scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
Linking To
Depends On Me
Imports Me
Suggests Me scp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scpdata_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
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