MMAPPR2data
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MMAPPR2data.
Sample Data for MMAPPR2
Bioconductor version: Release (3.19)
Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.
Author: Kyle Johnsen [aut], Jonathon Hill [cre]
Maintainer: Jonathon Hill <jhill at byu.edu>
citation("MMAPPR2data")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MMAPPR2data")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MMAPPR2data")| Using MMAPPR2data Resources | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Danio_rerio_Data, ExperimentData, Genome, RNASeqData, SequencingData |
| Version | 1.18.0 |
| License | GPL-3 |
| Depends | R (>= 3.6.0) |
| Imports | Rsamtools |
| System Requirements | |
| URL | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613585/ https://github.com/kjohnsen/MMAPPR2 |
See More
| Suggests | knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr |
| Linking To | |
| Enhances | MMAPPR2 |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MMAPPR2data_1.18.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MMAPPR2data |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MMAPPR2data |
| Package Short Url | https://bioconductor.org/packages/MMAPPR2data/ |
| Package Downloads Report | Download Stats |