single
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see single.
Accurate consensus sequence from nanopore reads of a gene library
Bioconductor version: Release (3.19)
Accurate consensus sequence from nanopore reads of a DNA gene library. SINGLe corrects for systematic errors in nanopore sequencing reads of gene libraries and it retrieves true consensus sequences of variants identified by a barcode, needing only a few reads per variant. More information in preprint doi: https://doi.org/10.1101/2020.03.25.007146.
Author: Rocio Espada [aut, cre] 
Maintainer: Rocio Espada <rocio.espada at espci.fr>
citation("single")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("single")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("single")| single | HTML | R Script |
| single_fullcode | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Sequencing, Software |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0) |
| Imports | Biostrings, BiocGenerics, dplyr, GenomicAlignments, IRanges, methods, reshape2, rlang, Rsamtools, stats, stringr, tidyr, utils |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | single_1.7.0.tar.gz |
| Windows Binary (x86_64) | single_1.8.0.zip |
| macOS Binary (x86_64) | single_1.8.0.tgz |
| macOS Binary (arm64) | single_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/single |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/single |
| Bioc Package Browser | https://code.bioconductor.org/browse/single/ |
| Package Short Url | https://bioconductor.org/packages/single/ |
| Package Downloads Report | Download Stats |