Accurate consensus sequence from nanopore reads of a gene
library
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Documentation for package ‘single’ version 1.8.0
Help Pages
| ascii_v | ASCII code |
| bases | Bases |
| evaluate_fits | Evaluate SINGLE fits |
| fit_logregr | Fit SINGLE's logistic regression |
| glm.predict. | Computes prior probability of mutations |
| list_mismatches | Lists mismatches between two DNAstrings |
| mutation_rate | mutation_rate |
| pileup_by_QUAL | Pileup by QUAL |
| p_prior_errors | Computes prior probability of errors |
| p_prior_mutations | Computes prior probability of mutations |
| single_consensus_byBarcode | Compute SINGLE consensus |
| single_evaluate | Evaluate SINGLE model |
| single_train | Train SINGLE model |
| weighted_consensus | Compute consensus sequence |