crisprViz
Visualization Functions for CRISPR gRNAs
Bioconductor version: Release (3.19)
Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.
Author: Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
citation("crisprViz")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("crisprViz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("crisprViz")| Introduction to crisprViz | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CRISPR, FunctionalGenomics, GeneTarget, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.2.0), crisprBase(>= 0.99.15), crisprDesign(>= 0.99.77) |
| Imports | BiocGenerics, Biostrings, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, grDevices, Gviz, IRanges, methods, S4Vectors, txdbmaker |
| System Requirements | |
| URL | https://github.com/crisprVerse/crisprViz |
| Bug Reports | https://github.com/crisprVerse/crisprViz/issues |
See More
| Suggests | AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, rtracklayer, testthat, utils |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | crisprShiny, crisprVerse |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | crisprViz_1.6.0.tar.gz |
| Windows Binary (x86_64) | crisprViz_1.6.0.zip |
| macOS Binary (x86_64) | crisprViz_1.6.0.tgz |
| macOS Binary (arm64) | crisprViz_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/crisprViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/crisprViz |
| Bioc Package Browser | https://code.bioconductor.org/browse/crisprViz/ |
| Package Short Url | https://bioconductor.org/packages/crisprViz/ |
| Package Downloads Report | Download Stats |