crisprShiny
Exploring curated CRISPR gRNAs via Shiny
Bioconductor version: Release (3.19)
Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.
Author: Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
citation("crisprShiny")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("crisprShiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("crisprShiny")| Introduction to crisprShiny | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CRISPR, FunctionalGenomics, GUI, GeneTarget, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4.0), shiny |
| Imports | BiocGenerics, Biostrings, BSgenome, crisprBase, crisprDesign, crisprScore, crisprViz, DT, GenomeInfoDb, htmlwidgets, methods, pwalign, S4Vectors, shinyBS, shinyjs, utils, waiter |
| System Requirements | |
| URL | https://github.com/crisprVerse/crisprShiny |
| Bug Reports | https://github.com/crisprVerse/crisprShiny/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, shinyFeedback, testthat (>= 3.0.0), BSgenome.Hsapiens.UCSC.hg38 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | crisprShiny_1.0.0.tar.gz |
| Windows Binary (x86_64) | crisprShiny_1.0.0.zip |
| macOS Binary (x86_64) | crisprShiny_1.0.0.tgz |
| macOS Binary (arm64) | crisprShiny_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/crisprShiny |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/crisprShiny |
| Bioc Package Browser | https://code.bioconductor.org/browse/crisprShiny/ |
| Package Short Url | https://bioconductor.org/packages/crisprShiny/ |
| Package Downloads Report | Download Stats |