scMultiome

DOI: 10.18129/B9.bioc.scMultiome  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see scMultiome.

Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

Bioconductor version: 3.17

Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.

Author: Xiaosai Yao [cre, aut] , Aleksander Chlebowski [aut], Aaron Lun [aut], Shiqi Xie [ctb], Tomasz Wlodarczyk [aut]

Maintainer: Xiaosai Yao <xiaosai.yao at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scMultiome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scMultiome")

 

HTML	R Script	scMultiome tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellCulture, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue
Version	1.0.1
License	CC BY-SA 4.0
Depends	AnnotationHub, ExperimentHub(>= 2.8.1), MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment
Imports	AzureStor, DelayedArray, GenomicRanges, HDF5Array, S4Vectors, checkmate, methods, rhdf5
LinkingTo
Suggests	BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scMultiome_1.0.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/scMultiome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scMultiome
Package Short Url	https://bioconductor.org/packages/scMultiome/
Package Downloads Report	Download Stats