DOI: 10.18129/B9.bioc.scRepertoire  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see scRepertoire.

A toolkit for single-cell immune receptor profiling

Bioconductor version: 3.17

scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.

Author: Nick Borcherding [aut, cre]

Maintainer: Nick Borcherding <ncborch at>

Citation (from within R, enter citation("scRepertoire")):


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biocViews Annotation, Classification, ImmunoOncology, Sequencing, SingleCell, Software
Version 1.10.1
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-2
Depends ggplot2, R (>= 4.0)
Imports stringdist, dplyr, reshape2, ggalluvial, stringr, vegan, powerTCR, SingleCellExperiment, SummarizedExperiment, plyr, parallel, doParallel, methods, utils, rlang, igraph, ggraph, tidygraph, SeuratObject, stats
Suggests knitr, rmarkdown, BiocStyle, circlize, scales, Seurat, scater
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