DOI: 10.18129/B9.bioc.mbOmic  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see mbOmic.

Integrative analysis of the microbiome and metabolome

Bioconductor version: 3.17

The mbOmic package contains a set of analysis functions for microbiomics and metabolomics data, designed to analyze the inter-omic correlation between microbiology and metabolites. Integrative analysis of the microbiome and metabolome is the aim of mbOmic. Additionally, the identification of enterotype using the gut microbiota abundance is preliminaryimplemented.

Author: Congcong Gong [aut, cre]

Maintainer: Congcong Gong <congconggong33 at gmail.com>

Citation (from within R, enter citation("mbOmic")):


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HTML R Script enterotyping
HTML R Script Integrative analysis of metabolome and microbiome
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biocViews Metabolomics, Microbiome, Network, Software
Version 1.3.0
In Bioconductor since BioC 3.15 (R-4.2) (1.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports parallel, doParallel, psych, WGCNA, data.table, igraph, visNetwork, cluster, clusterSim, methods, graphics, stats
Suggests testthat (>= 3.0.0), knitr, rmarkdown, devtools, impute
URL https://github.com/gongcongcong/mbOmic
BugReports https://github.com/gongcongcong/mbOmic/issues
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Source Package mbOmic_1.3.0.tar.gz
Windows Binary mbOmic_1.3.0.zip
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macOS Binary (arm64) mbOmic_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mbOmic
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mbOmic
Bioc Package Browser https://code.bioconductor.org/browse/mbOmic/
Package Short Url https://bioconductor.org/packages/mbOmic/
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