Integrative analysis of the microbiome and metabolome
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Documentation for package ‘mbOmic’ version 1.3.0
Help Pages
| bSet | bSet |
| bSet-class | bSet |
| clean_analytes | clean_analytes |
| cluster_jsd | cluster_jsd |
| coExpress | coExpress |
| coExpress-method | coExpress |
| cor2df | cor2df |
| corr | corr |
| corr-method | corr |
| dist_jsd | dist_jsd Calculating Jensen-Shannon divergence basing the formulate JSD(P || Q) = sqrt{0.5 \times KLD (P||\frac{P + Q}{2}) + 0.5 \times KLD(Q||\frac{P+Q}{2})} . |
| enterotyping | enterotyping |
| estimate_k | estimate_k |
| features | features |
| features<- | features |
| mb_initialize | mb_initialize initialized function for 'mSet' and 'bSet' classs. |
| mSet | mSet |
| mSet-class | mSet |
| ncol-method | ncol |
| nrow-method | nrow |
| pickST | pickST |
| plot_coExpress | plot_coExpress |
| plot_network | plot_network |
| print.verCHI | print.verCHI |
| quiteRun | quiteRun Run expression in quite mode. |
| samples | samples |
| samples<- | samples |
| Set-class | Set |
| show-method | show |
| vmh-class | vmh |
| [.Set | subset_Set |