ldblock

DOI: 10.18129/B9.bioc.ldblock  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ldblock.

data structures for linkage disequilibrium measures in populations

Bioconductor version: 3.17

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

 

HTML	R Script	ldblock package: linkage disequilibrium data structures
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.30.0
In Bioconductor since	BioC 3.2 (R-3.2) (8 years)
License	Artistic-2.0
Depends	R (>= 3.5), methods, rlang
Imports	BiocGenerics(>= 0.25.1), httr, Matrix
LinkingTo
Suggests	RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats, VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ldblock_1.30.0.tar.gz
Windows Binary	ldblock_1.30.0.zip
macOS Binary (x86_64)	ldblock_1.30.0.tgz
macOS Binary (arm64)	ldblock_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ldblock
Bioc Package Browser	https://code.bioconductor.org/browse/ldblock/
Package Short Url	https://bioconductor.org/packages/ldblock/
Package Downloads Report	Download Stats