ldblock

DOI: 10.18129/B9.bioc.ldblock  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ldblock.

data structures for linkage disequilibrium measures in populations

Bioconductor version: 3.17

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

 

HTML R Script ldblock package: linkage disequilibrium data structures
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.30.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License Artistic-2.0
Depends R (>= 3.5), methods, rlang
Imports BiocGenerics(>= 0.25.1), httr, Matrix
LinkingTo
Suggests RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats, VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles(>= 1.13.6)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.30.0.tar.gz
Windows Binary ldblock_1.30.0.zip
macOS Binary (x86_64) ldblock_1.30.0.tgz
macOS Binary (arm64) ldblock_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock
Bioc Package Browser https://code.bioconductor.org/browse/ldblock/
Package Short Url https://bioconductor.org/packages/ldblock/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: