DOI: 10.18129/B9.bioc.hca  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see hca.

Exploring the Human Cell Atlas Data Coordinating Platform

Bioconductor version: 3.17

This package provides users with the ability to query the Human Cell Atlas data repository for single-cell experiment data. The `projects()`, `files()`, `samples()` and `bundles()` functions retrieve summary information on each of these indexes; corresponding `*_details()` are available for individual entries of each index. File-based resources can be downloaded using `files_download()`. Advanced use of the package allows the user to page through large result sets, and to flexibly query the 'list-of-lists' structure representing query responses.

Author: Maya McDaniel [aut], Martin Morgan [aut, cre] , Kayla Interdonato [ctb]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("hca")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script Accessing Human Cell Atlas Data
HTML R Script Working With Human Cell Atlas Manifests
PDF   Reference Manual
Text   NEWS


biocViews SingleCell, Software
Version 1.8.1
In Bioconductor since BioC 3.13 (R-4.1) (2.5 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports httr, jsonlite, dplyr, tibble, tidyr, readr, BiocFileCache, tools, utils, digest, shiny, miniUI, DT
Suggests LoomExperiment, SummarizedExperiment, SingleCellExperiment, S4Vectors, methods, testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package hca_1.8.1.tar.gz
Windows Binary hca_1.8.1.zip (64-bit only)
macOS Binary (x86_64) hca_1.8.1.tgz
macOS Binary (arm64) hca_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/hca
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hca
Bioc Package Browser https://code.bioconductor.org/browse/hca/
Package Short Url https://bioconductor.org/packages/hca/
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