flowCut

DOI: 10.18129/B9.bioc.flowCut  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see flowCut.

Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Bioconductor version: 3.17

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Author: Justin Meskas [cre, aut], Sherrie Wang [aut]

Maintainer: Justin Meskas <justinmeskas at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCut")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCut")

 

HTML	R Script	_**flowCut**_: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, FlowCytometry, Preprocessing, QualityControl, Software
Version	1.10.0
In Bioconductor since	BioC 3.12 (R-4.0) (3 years)
License	Artistic-2.0
Depends	R (>= 3.4), flowCore
Imports	flowDensity(>= 1.13.1), Cairo, e1071, grDevices, graphics, stats, methods
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, markdown, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowCut_1.10.0.tar.gz
Windows Binary	flowCut_1.10.0.zip (64-bit only)
macOS Binary (x86_64)	flowCut_1.10.0.tgz
macOS Binary (arm64)	flowCut_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowCut
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowCut
Bioc Package Browser	https://code.bioconductor.org/browse/flowCut/
Package Short Url	https://bioconductor.org/packages/flowCut/
Package Downloads Report	Download Stats