flowAI

DOI: 10.18129/B9.bioc.flowAI  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see flowAI.

Automatic and interactive quality control for flow cytometry data

Bioconductor version: 3.17

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco, Hao Chen

Maintainer: Gianni Monaco <mongianni1 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")

 

HTML	R Script	Automatic and GUI methods to do quality control on Flow cytometry Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software
Version	1.30.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 3.6)
Imports	ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown
LinkingTo
Suggests	testthat, shiny, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	CytoPipeline
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowAI_1.30.0.tar.gz
Windows Binary	flowAI_1.30.0.zip (64-bit only)
macOS Binary (x86_64)	flowAI_1.30.0.tgz
macOS Binary (arm64)	flowAI_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowAI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowAI
Bioc Package Browser	https://code.bioconductor.org/browse/flowAI/
Package Short Url	https://bioconductor.org/packages/flowAI/
Package Downloads Report	Download Stats