DOI: 10.18129/B9.bioc.cellxgenedp  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see cellxgenedp.

Discover and Access Single Cell Data Sets in the cellxgene Data Portal

Bioconductor version: 3.17

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("cellxgenedp")):


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HTML R Script Discover and download datasets and files from the cellxgene data portal
PDF   Reference Manual
Text   NEWS


biocViews DataImport, SingleCell, Software, ThirdPartyClient
Version 1.4.1
In Bioconductor since BioC 3.15 (R-4.2) (1.5 years)
License Artistic-2.0
Depends dplyr
Imports httr, curl, jsonlite, utils, tools, shiny, DT, rjsoncons
Suggests zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
URL https://mtmorgan.github.io/cellxgenedp/
BugReports https://github.com/mtmorgan/cellxgenedp/issues
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Follow Installation instructions to use this package in your R session.

Source Package cellxgenedp_1.4.1.tar.gz
Windows Binary cellxgenedp_1.4.1.zip
macOS Binary (x86_64) cellxgenedp_1.4.1.tgz
macOS Binary (arm64) cellxgenedp_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellxgenedp
Bioc Package Browser https://code.bioconductor.org/browse/cellxgenedp/
Package Short Url https://bioconductor.org/packages/cellxgenedp/
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