DOI: 10.18129/B9.bioc.affycoretools  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see affycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Bioconductor version: 3.17

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at>

Citation (from within R, enter citation("affycoretools")):


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HTML R Script Creating annotated output with \Biocpkg{affycoretools} and ReportingTools
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.72.0
In Bioconductor since BioC 1.8 (R-2.3) (17.5 years)
License Artistic-2.0
Depends Biobase, methods
Imports affy, limma, GOstats, gcrma, splines, xtable, AnnotationDbi, ggplot2, gplots, oligoClasses, ReportingTools, hwriter, lattice, S4Vectors, edgeR, RSQLite, BiocGenerics, DBI, Glimma
Suggests affydata, hgfocuscdf, BiocStyle, knitr, hgu95av2.db, rgl, rmarkdown
Depends On Me AgiMicroRna
Imports Me
Suggests Me EnMCB
Links To Me
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